| Filename | Total | Flagged As Poor Quality | Sequence Length | %GC |
|---|---|---|---|---|
| 2.Illumina_indexing-35.CP-4937_R1.fastq.gz | 168,489,110 | 0 | 50-151 | 42 |
| 2.Illumina_indexing-35.CP-4937_R2.fastq.gz | 168,489,110 | 0 | 50-151 | 42 |
| 2.Illumina_indexing-5.CP-4935_R1.fastq.gz | 169,465,652 | 0 | 50-151 | 42 |
| 2.Illumina_indexing-5.CP-4935_R2.fastq.gz | 169,465,652 | 0 | 50-151 | 42 |
| 2.Illumina_indexing-6.CP-4936_R1.fastq.gz | 176,714,410 | 0 | 50-151 | 42 |
| 2.Illumina_indexing-6.CP-4936_R2.fastq.gz | 176,714,410 | 0 | 50-151 | 42 |
Library Sizes ranged between 168,489,110 and 176,714,410 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Btaurus Genome
GC Content Distributions for all reads showing theoretical GC content from the Btaurus Genome
Universal Adapter Content
| Filename | Sequence | Count | PValue | Obs/Exp_Max | Max_Obs/Exp_Position |
|---|---|---|---|---|---|
| 2.Illumina_indexing-6.CP-4936_R1 | GATCAAT | 298,000 | 0 | 7.37 | 1 |
| 2.Illumina_indexing-35.CP-4937_R1 | GATCAAT | 283,070 | 0 | 7.253 | 1 |
| 2.Illumina_indexing-5.CP-4935_R1 | GATCAAT | 282,530 | 0 | 6.919 | 1 |
| 2.Illumina_indexing-6.CP-4936_R1 | GATCACA | 595,825 | 0 | 7.149 | 1 |
| 2.Illumina_indexing-5.CP-4935_R1 | GATCACA | 577,970 | 0 | 7.336 | 1 |
| 2.Illumina_indexing-35.CP-4937_R1 | GATCACA | 568,850 | 0 | 7.164 | 1 |
| 2.Illumina_indexing-6.CP-4936_R2 | GATCACA | 478,705 | 0 | 8.09 | 1 |
| 2.Illumina_indexing-5.CP-4935_R2 | GATCACA | 464,595 | 0 | 8.446 | 1 |
| 2.Illumina_indexing-35.CP-4937_R2 | GATCACA | 458,220 | 0 | 8.131 | 1 |
| 2.Illumina_indexing-6.CP-4936_R1 | GATCACT | 296,385 | 0 | 7.046 | 1 |
| 2.Illumina_indexing-5.CP-4935_R1 | GATCACT | 289,550 | 0 | 7.311 | 1 |
| 2.Illumina_indexing-35.CP-4937_R1 | GATCACT | 282,860 | 0 | 6.987 | 1 |
| 2.Illumina_indexing-6.CP-4936_R1 | GATCATC | 326,640 | 0 | 6.227 | 1 |
| 2.Illumina_indexing-5.CP-4935_R1 | GATCATC | 314,470 | 0 | 6.094 | 1 |
| 2.Illumina_indexing-35.CP-4937_R1 | GATCATC | 308,310 | 0 | 6.466 | 1 |
| 2.Illumina_indexing-6.CP-4936_R2 | GATCATC | 285,125 | 0 | 6.401 | 1 |
| 2.Illumina_indexing-5.CP-4935_R2 | GATCATC | 277,335 | 0 | 6.387 | 1 |
| 2.Illumina_indexing-6.CP-4936_R1 | GATCATG | 445,890 | 0 | 6.672 | 1 |
| 2.Illumina_indexing-5.CP-4935_R1 | GATCATG | 424,670 | 0 | 6.331 | 1 |
| 2.Illumina_indexing-35.CP-4937_R1 | GATCATG | 423,785 | 0 | 6.324 | 1 |
| 2.Illumina_indexing-6.CP-4936_R2 | GATCATG | 396,330 | 0 | 6.666 | 1 |
| 2.Illumina_indexing-5.CP-4935_R2 | GATCATG | 377,060 | 0 | 6.573 | 1 |
| 2.Illumina_indexing-35.CP-4937_R2 | GATCATG | 373,905 | 0 | 6.583 | 1 |
| 2.Illumina_indexing-6.CP-4936_R2 | GATCATT | 370,370 | 0 | 6.383 | 1 |
| 2.Illumina_indexing-5.CP-4935_R2 | GATCATT | 355,985 | 0 | 6.356 | 1 |
| 2.Illumina_indexing-6.CP-4936_R1 | GATCCAA | 284,805 | 0 | 6.314 | 1 |
| 2.Illumina_indexing-5.CP-4935_R1 | GATCCAA | 274,560 | 0 | 6.413 | 1 |
| 2.Illumina_indexing-6.CP-4936_R1 | GATCCCT | 313,990 | 0 | 6.365 | 1 |
| 2.Illumina_indexing-5.CP-4935_R1 | GATCCCT | 303,765 | 0 | 6.33 | 1 |
| 2.Illumina_indexing-35.CP-4937_R2 | GATCCCT | 292,290 | 0 | 6.219 | 1 |